{ "_id": "6aa91df9089bafb098cfcbb1", "Package": "sisters", "Title": "Runs various sister group comparisons to test hypotheses about\ndiversification", "Version": "0.0.0.9000", "Authors@R": "person(given = \"Brian\",\nfamily = \"O'Meara\",\nrole = c(\"aut\", \"cre\"),\nemail = \"omeara.brian@gmail.com\",\ncomment = c(ORCID = \"0000-0002-0337-5997\"))", "Description": "Sister groups are pairs of clades that differ in a key\ncharacter. If that character leads to higher diversification\nrate, then clades with that trait should have more species than\ntheir sisters. There are several tests to see if this is the\ncase, ranging from a basic sign test to more complex ones (many\nimplemented in the ape package). This package can identify\nsister groups that differ in a binary trait and perform all the\nrelevant tests. It can also discretize a continuous trait into\na binary \"high\" vs \"low\" state.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.1.1", "Config/pak/sysreqs": "libglpk-dev libxml2-dev", "Repository": "https://bomeara.r-universe.dev", "Date/Publication": "2023-09-29 15:14:34 UTC", "RemoteUrl": "https://github.com/bomeara/sisters", "RemoteRef": "HEAD", "RemoteSha": "219ba29741758d5a089a2f9aa6a7852d56b68250", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-15 10:26:12 UTC", "User": "root" }, "Author": "Brian O'Meara [aut, cre] (ORCID:\n)", "Maintainer": "Brian O'Meara ", "_user": "bomeara", "_type": "src", "_file": "sisters_0.0.0.9000.tar.gz", "_fileid": "https://r2.ropensci.org/23e591bf2fbc53019f64c72b84c07f191e4b7b49bc61109e9e6d0d4f2fcd716a", "_filesize": 214580, "_sha256": "23e591bf2fbc53019f64c72b84c07f191e4b7b49bc61109e9e6d0d4f2fcd716a", "_expires": "2026-12-24T10:29:11.000Z", "_created": "2026-09-15T10:26:12.000Z", "_published": "2026-09-15T10:29:13.754Z", 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}, { "package": "phangorn", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "covr", "role": "Suggests" }, { "package": "pkgdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 2.1.0", "role": "Suggests" } ], "_owner": "bomeara", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 2, "_contributors": [ { "user": "bomeara", "count": 15, "uuid": 1612612 } ], "_userbio": { "uuid": 1612612, "type": "user", "name": "Brian O'Meara", "followers": 112 }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/sisters" }, "_devurl": "https://github.com/bomeara/sisters", "_searchresults": 2, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "extra/sisters.html", "manual.pdf" ], "_cranurl": false, "_exports": [ "sis_clean", "sis_discretize", "sis_format_comparison", "sis_format_simpified", "sis_get_sister_pair", "sis_get_sisters", "sis_iterate", "sis_test" ], "_help": [ { "page": "sis_clean", "title": "Clean up trait and tree", "topics": [ "sis_clean" ] }, { "page": "sis_discretize", "title": "Discretize continuous trait data", "topics": [ "sis_discretize" ] }, { "page": "sis_find_taxon", "title": "Is the taxon in one of the sister groups", "topics": [ "sis_find_taxon" ] }, { "page": "sis_format_comparison", "title": "Get comparison format", "topics": [ "sis_format_comparison" ] }, { "page": "sis_format_simpified", "title": "Get simplified comparison format suitable for passing into other functions", "topics": [ "sis_format_simpified" ] }, { "page": "sis_get_monomorphic", "title": "Get monomorphic trait", "topics": [ "sis_get_monomorphic" ] }, { "page": "sis_get_sister_pair", "title": "Get sister groups for a node", "topics": [ "sis_get_sister_pair" ] }, { "page": "sis_get_sisters", "title": "Get sister groups for all internal nodes", "topics": [ "sis_get_sisters" ] }, { "page": "sis_get_trait_values", "title": "Get trait values for tip numbers", "topics": [ "sis_get_trait_values" ] }, { "page": "sis_iterate", "title": "Iterate tests trying a variety of cutoff values", "topics": [ "sis_iterate" ] }, { "page": "sis_iterate_single_run", "title": "Do a test with a single cutoff value", "topics": [ "sis_iterate_single_run" ] }, { "page": "sis_test", "title": "Compute multiple tests based on sister group comparisons", "topics": [ "sis_test" ] }, { "page": "tryNA", "title": "Try but returns NA rather than error", "topics": [ "tryNA" ] } ], "_readme": "https://github.com/bomeara/sisters/raw/HEAD/README.md", "_rundeps": [ "ape", "cli", "clusterGeneration", "coda", "codetools", "colorspace", "combinat", "cpp11", "DEoptim", "deSolve", "digest", "doParallel", "expm", "fastmatch", "foreach", "geiger", "generics", "glue", "igraph", "iterators", "lattice", "lifecycle", "magrittr", "maps", "MASS", "Matrix", 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